PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004516103.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family NF-YB
Protein Properties Length: 191aa    MW: 20467.7 Da    PI: 6.6746
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004516103.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB1855.7e-5826121297
           NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                     reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfe+yveplkvyl+++re+ege
  XP_004516103.1  26 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQRFREMEGE 120
                     89*******************************************************************************************99 PP

           NF-YB  97 k 97 
                     k
  XP_004516103.1 121 K 121
                     7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.5E-5521132IPR009072Histone-fold
SuperFamilySSF471132.02E-4028133IPR009072Histone-fold
PfamPF008085.3E-283195IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006157.4E-215977No hitNo description
PROSITE patternPS0068506278IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006157.4E-217896No hitNo description
PRINTSPR006157.4E-2197115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MADSDNDSGG PHNGGGSNAH GEMSPREQDR FLPIANVSRI MKKALPANAK ISKDAKETVQ  60
ECVSEFISFI TGEASDKCQR EKRKTINGDD LLWAMTTLGF EEYVEPLKVY LQRFREMEGE  120
KCVAARDKDA PQSSNNVSNS SFESGSYGGG IMMHQGHVYG SGGFHQVGGT TVMGKGGPGY  180
SGPGSNAGRP R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_B2e-4823116194NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A2e-4823116194NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004516103.11e-142PREDICTED: nuclear transcription factor Y subunit B-3-like
SwissprotO233102e-75NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBLA0A0S3S6N11e-116A0A0S3S6N1_PHAAN; Uncharacterized protein
TrEMBLA0A0L9VBC01e-116A0A0L9VBC0_PHAAN; Uncharacterized protein
STRINGGLYMA18G08620.11e-110(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59134150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.17e-74nuclear factor Y, subunit B3